Genomic Study Data Format

draft

URL

http://hl7.org/fhir/ValueSet/genomicstudy-dataformat

Version

5.0.0

PublisherHL7 (FHIR Project)Date2022-08-17T15:02:11-05:00Description

The data formats relevant to Genomic Study analysis.

Expansion

Code	Display	System
bam	BAM	http://hl7.org/fhir/genomicstudy-dataformat
bed	BED	http://hl7.org/fhir/genomicstudy-dataformat
bedpe	BEDPE	http://hl7.org/fhir/genomicstudy-dataformat
bedgraph	BedGraph	http://hl7.org/fhir/genomicstudy-dataformat
bigbed	bigBed	http://hl7.org/fhir/genomicstudy-dataformat
bigWig	bigWig	http://hl7.org/fhir/genomicstudy-dataformat
birdsuite-files	Birdsuite-Files	http://hl7.org/fhir/genomicstudy-dataformat
broadpeak	broadPeak	http://hl7.org/fhir/genomicstudy-dataformat
cbs	CBS	http://hl7.org/fhir/genomicstudy-dataformat
chemical-reactivity-probing-profiles	Chemical-Reactivity-Probing-Profiles	http://hl7.org/fhir/genomicstudy-dataformat
chrom-sizes	chrom-sizes	http://hl7.org/fhir/genomicstudy-dataformat
cn	CN	http://hl7.org/fhir/genomicstudy-dataformat
custom-file-formats	Custom-File-Formats	http://hl7.org/fhir/genomicstudy-dataformat
cytoband	Cytoband	http://hl7.org/fhir/genomicstudy-dataformat
fasta	FASTA	http://hl7.org/fhir/genomicstudy-dataformat
gct	GCT	http://hl7.org/fhir/genomicstudy-dataformat
cram	CRAM	http://hl7.org/fhir/genomicstudy-dataformat
genepred	genePred	http://hl7.org/fhir/genomicstudy-dataformat
gff-gtf	GFF/GTF	http://hl7.org/fhir/genomicstudy-dataformat
gistic	GISTIC	http://hl7.org/fhir/genomicstudy-dataformat

{
  "description" : "The data formats relevant to Genomic Study analysis.",
  "compose" : {
    "exclude" : [ ],
    "include" : [ {
      "system" : "http://hl7.org/fhir/genomicstudy-dataformat"
    } ]
  },
  "date" : "2022-08-17T15:02:11-05:00",
  "meta" : {
    "lastUpdated" : "2023-03-26T15:21:02.749+11:00",
    "profile" : [ "http://hl7.org/fhir/StructureDefinition/shareablevalueset" ]
  },
  "publisher" : "HL7 (FHIR Project)",
  "jurisdiction" : [ {
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      "code" : "001",
      "display" : "World"
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  } ],
  "name" : "GenomicStudyDataFormat",
  "experimental" : true,
  "resourceType" : "ValueSet",
  "title" : "Genomic Study Data Format",
  "extension" : [ {
    "valueCode" : "cg",
    "url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg"
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    "valueCode" : "trial-use",
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    "valueInteger" : 1
  }, {
    "url" : "http://health-samurai.io/extensions/source",
    "valueCode" : "db"
  } ],
  "status" : "draft",
  "id" : "genomicstudy-dataformat",
  "url" : "http://hl7.org/fhir/ValueSet/genomicstudy-dataformat",
  "identifier" : [ {
    "system" : "urn:ietf:rfc:3986",
    "value" : "urn:oid:2.16.840.1.113883.4.642.3.3084"
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  "text" : {
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