Viruses [Causing Encephalitis] (Tests for Viruses Causing Encephalitis in Unspecified Specimen by Culture and Identification)

{
  "compose" : {
    "exclude" : [ ],
    "include" : [ {
      "system" : "http://loinc.org",
      "extension" : [ {
        "extension" : [ {
          "valueString" : "concept",
          "url" : "path"
        }, {
          "url" : "count",
          "valueInteger" : 90
        } ],
        "url" : "http://health-samurai.io/extensions/excised-data"
      } ]
    } ]
  },
  "date" : "2024-06-20T01:22:57-04:00",
  "meta" : {
    "versionId" : "13",
    "lastUpdated" : "2024-06-20T01:22:57.000-04:00",
    "profile" : [ "http://hl7.org/fhir/StructureDefinition/shareablevalueset", "http://hl7.org/fhir/us/cqfmeasures/StructureDefinition/computable-valueset-cqfm", "http://hl7.org/fhir/us/cqfmeasures/StructureDefinition/publishable-valueset-cqfm" ]
  },
  "publisher" : "CSTE Steward",
  "jurisdiction" : [ {
    "coding" : [ {
      "system" : "urn:iso:std:iso:3166",
      "code" : "US"
    } ]
  } ],
  "purpose" : "(Clinical Focus: This set of values contains codes for laboratory test names associated with Encephalitis-causing viruses by culture and identification tests),(Data Element Scope: Laboratory tests names that were ordered or observed.),(Inclusion Criteria: Encephalitis-causing viruses by culture and identification tests),(Exclusion Criteria: none)",
  "name" : "VirusesCausingEncephalitisTestsForVirusesCausingEncephalitisInUnspecifiedSpecimenByCultureAndIdentification",
  "resourceType" : "ValueSet",
  "expansion" : {
    "contains" : [ {
      "system" : "http://loinc.org",
      "code" : "10860-5",
      "display" : "Varicella zoster virus [Presence] in Specimen by Organism specific culture",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "13921-2",
      "display" : "Mumps virus [Presence] in Specimen by Organism specific culture",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "14084-8",
      "display" : "Herpes simplex virus 1 [Presence] in Isolate by Immunofluorescence",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "14085-5",
      "display" : "Herpes simplex virus 2 [Presence] in Isolate by Immunofluorescence",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "16291-7",
      "display" : "Herpes simplex virus 1 [Presence] in Specimen by Organism specific culture",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "20445-3",
      "display" : "Herpes virus identified in Specimen by Organism specific culture",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "22826-2",
      "display" : "Influenza virus A identified in Specimen by Bioassay",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "35422-5",
      "display" : "Herpes simplex virus identified in Body fluid by Organism specific culture",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "35431-6",
      "display" : "Herpes simplex virus identified in Tissue by Organism specific culture",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "38382-8",
      "display" : "Influenza virus B [Presence] in Specimen by Organism specific culture",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "40436-8",
      "display" : "Parainfluenza virus identified in Specimen by Organism specific culture",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "43693-1",
      "display" : "Varicella zoster virus identified in Skin by Shell vial culture",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "43695-6",
      "display" : "Herpes virus identified in Specimen by Shell vial culture",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "43697-2",
      "display" : "Herpes simplex virus identified in Specimen by Shell vial culture",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "43698-0",
      "display" : "Enterovirus identified in Specimen by Shell vial culture",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "43701-2",
      "display" : "Cytomegalovirus [Presence] in Specimen by Shell vial culture",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "43704-6",
      "display" : "Cytomegalovirus [Presence] in Body fluid by Shell vial culture",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "43707-9",
      "display" : "Cytomegalovirus [Presence] in Tissue by Shell vial culture",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "44484-4",
      "display" : "Herpes simplex virus 2 [Presence] in Specimen by Organism specific culture",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "48310-7",
      "display" : "Influenza virus A [Presence] in Specimen by Organism specific culture",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "49520-0",
      "display" : "Influenza virus A H1 RNA [Presence] in Isolate by NAA with probe detection",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "49522-6",
      "display" : "Influenza virus A H3 Ag [Presence] in Isolate by Immunofluorescence",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "49523-4",
      "display" : "Influenza virus A H3 RNA [Presence] in Isolate by NAA with probe detection",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "49526-7",
      "display" : "Influenza virus A H5 RNA [Presence] in Isolate by NAA with probe detection",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "49527-5",
      "display" : "Influenza virus A H7 RNA [Presence] in Isolate by NAA with probe detection",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "49529-1",
      "display" : "Influenza virus A Ag [Presence] in Isolate by Immunofluorescence",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "49531-7",
      "display" : "Influenza virus A RNA [Presence] in Isolate by NAA with probe detection",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "49532-5",
      "display" : "Influenza virus A hemagglutinin type RNA [Identifier] in Isolate by Sequencing",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "49538-2",
      "display" : "Influenza virus identified in Specimen by Shell vial culture",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "50697-2",
      "display" : "Influenza virus A Ag [Identifier] in Isolate",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "50701-2",
      "display" : "Influenza virus A H1 Ag [Presence] in Isolate by Immunofluorescence",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "50702-0",
      "display" : "Influenza virus A matrix protein RNA [Presence] in Isolate by Sequencing",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "50704-6",
      "display" : "Influenza virus A nucleoprotein RNA [Presence] in Isolate by Sequencing",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "50705-3",
      "display" : "Influenza virus A non-structural protein RNA [Presence] in Isolate by Sequencing",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "50706-1",
      "display" : "Influenza virus A polymerase A RNA [Presence] in Isolate by Sequencing",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "50707-9",
      "display" : "Influenza virus A polymerase B1 cDNA [Presence] in Isolate by Sequencing",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "50708-7",
      "display" : "Influenza virus A polymerase B2 RNA [Presence] in Isolate by Sequencing",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "50711-1",
      "display" : "Influenza virus A polymerase RNA [Identifier] in Isolate by Sequencing",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "55095-4",
      "display" : "Adenovirus [Presence] in Specimen by Organism specific culture",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "55097-0",
      "display" : "Parainfluenza virus 1 [Presence] in Specimen by Organism specific culture",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "55098-8",
      "display" : "Parainfluenza virus 2 [Presence] in Specimen by Organism specific culture",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "55099-6",
      "display" : "Parainfluenza virus 3 [Presence] in Specimen by Organism specific culture",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "55133-3",
      "display" : "Influenza virus A hemagglutinin cDNA [Identifier] in Isolate by NAA with probe detection",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "55134-1",
      "display" : "Influenza virus A neuraminidase RNA [Identifier] in Isolate by NAA with probe detection",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "5836-2",
      "display" : "Cytomegalovirus [Presence] in Tissue by Organism specific culture",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "5838-8",
      "display" : "Cytomegalovirus [Presence] in Specimen by Organism specific culture",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "5840-4",
      "display" : "Enterovirus identified in Isolate by Immunofluorescence",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "5841-2",
      "display" : "Enterovirus identified in Isolate by Neutralization test",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "5843-8",
      "display" : "Enterovirus identified in Specimen by Organism specific culture",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "5857-8",
      "display" : "Herpes simplex virus identified in Isolate by Immunofluorescence",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "5859-4",
      "display" : "Herpes simplex virus identified in Specimen by Organism specific culture",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "59424-2",
      "display" : "Influenza virus A hemagglutinin type RNA [Identifier] in Isolate by NAA with probe detection",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "60259-9",
      "display" : "Adenovirus DNA [Presence] in Isolate by NAA with probe detection",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "60263-1",
      "display" : "Enterovirus RNA [Presence] in Isolate by NAA with probe detection",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "60270-6",
      "display" : "Rabies virus RNA [Presence] in Isolate by NAA with probe detection",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "60429-8",
      "display" : "Enterovirus 71 RNA [Presence] in Isolate by NAA with probe detection",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "60530-3",
      "display" : "Influenza virus A H9 RNA [Presence] in Isolate by NAA with probe detection",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "62454-4",
      "display" : "Herpes simplex virus and Varicella zoster virus identified in Specimen by Organism specific culture",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "6431-1",
      "display" : "HIV identified in Specimen by Organism specific culture",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "6536-7",
      "display" : "Rabies virus identified in Tissue by Organism specific culture",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "6539-1",
      "display" : "Rabies virus identified in Specimen by Organism specific culture",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "6548-2",
      "display" : "Rubella virus identified in Serum by Organism specific culture",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "6604-3",
      "display" : "Influenza virus identified in Specimen by Organism specific culture",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "67805-2",
      "display" : "Cytomegalovirus Ag [Presence] in Isolate by Immunofluorescence",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "67806-0",
      "display" : "Measles virus Ag [Presence] in Isolate by Immunofluorescence",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "67807-8",
      "display" : "Mumps virus Ag [Presence] in Isolate by Immunofluorescence",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "67812-8",
      "display" : "Varicella zoster virus Ag [Presence] in Isolate by Immunofluorescence",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "76626-1",
      "display" : "Measles virus [Presence] in Specimen by Organism specific culture",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "76632-9",
      "display" : "Enterovirus sp [Presence] in Isolate by Immunofluorescence",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "82746-9",
      "display" : "Varicella zoster virus strain [Type] in Isolate",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "83325-1",
      "display" : "HIV 1 RNA genotype in Isolate",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "83326-9",
      "display" : "HIV 1 RNA genotype and phenotype in Isolate",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "83327-7",
      "display" : "HIV 1 RNA phenotype in Isolate",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "85532-0",
      "display" : "Influenza virus A whole genome [Nucleotide sequence] in Isolate by Sequencing",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "85802-7",
      "display" : "Influenza virus A H1 Ag [Titer] in Isolate by Hemagglutination inhibition",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "85803-5",
      "display" : "Influenza virus A H3 Ag [Titer] in Isolate by Hemagglutination inhibition",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "85804-3",
      "display" : "Influenza virus A H5 Ag [Titer] in Isolate by Hemagglutination inhibition",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "85805-0",
      "display" : "Influenza virus A H7 Ag [Titer] in Isolate by Hemagglutination inhibition",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "86322-5",
      "display" : "Enterovirus [Presence] in Specimen by Organism specific culture",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "87714-2",
      "display" : "Influenza virus A M gene [Nucleotide sequence] in Isolate by Sequencing",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "87715-9",
      "display" : "Influenza virus A HA gene [Nucleotide sequence] in Isolate by Sequencing",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "87716-7",
      "display" : "Influenza virus A NA gene [Nucleotide sequence] in Isolate by Sequencing",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "91773-2",
      "display" : "Herpes simplex virus identified in Aspirate by Organism specific culture",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "93759-9",
      "display" : "Influenza virus A PB2 gene [Nucleotide sequence] in Isolate by Sequencing",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "93760-7",
      "display" : "Influenza virus A PB1 gene [Nucleotide sequence] in Isolate by Sequencing",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "93761-5",
      "display" : "Influenza virus A PA gene [Nucleotide sequence] in Isolate by Sequencing",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "93762-3",
      "display" : "Influenza virus A NP gene [Nucleotide sequence] in Isolate by Sequencing",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "93763-1",
      "display" : "Influenza virus A NS1 gene [Nucleotide sequence] in Isolate by Sequencing",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "97732-2",
      "display" : "Enterovirus VP1 gene [Nucleotide sequence] in Isolate by Sequencing",
      "version" : "2.78"
    }, {
      "system" : "http://loinc.org",
      "code" : "9782-4",
      "display" : "Adenovirus sp identified in Specimen by Organism specific culture",
      "version" : "2.78"
    } ],
    "total" : 90,
    "identifier" : "urn:uuid:b88347a7-b387-4cd7-a434-0401d5a98a0e",
    "timestamp" : "2024-12-10T06:51:42-05:00"
  },
  "title" : "Viruses [Causing Encephalitis] (Tests for Viruses Causing Encephalitis in Unspecified Specimen by Culture and Identification)",
  "extension" : [ {
    "valueContactDetail" : {
      "name" : "CSTE Author"
    },
    "url" : "http://hl7.org/fhir/StructureDefinition/valueset-author"
  }, {
    "valueString" : "Encephalitis,Trigger",
    "url" : "http://hl7.org/fhir/StructureDefinition/valueset-keyWord"
  }, {
    "valueDate" : "2024-06-20",
    "url" : "http://hl7.org/fhir/StructureDefinition/resource-lastReviewDate"
  }, {
    "valueDate" : "2024-06-20",
    "url" : "http://hl7.org/fhir/StructureDefinition/valueset-effectiveDate"
  }, {
    "url" : "http://health-samurai.io/extensions/source",
    "valueCode" : "db"
  } ],
  "status" : "active",
  "id" : "daf4404d-25ef-43e3-9441-9ea23588b62c",
  "url" : "http://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113762.1.4.1146.2168",
  "identifier" : [ {
    "system" : "urn:ietf:rfc:3986",
    "value" : "urn:oid:2.16.840.1.113762.1.4.1146.2168"
  } ],
  "version" : "20240620"
}