COVID19 Lab Tests

{
  "description" : "Source https://loinc.org/prerelease/\nhttps://www.cms.gov/newsroom/press-releases/cms-develops-additional-code-coronavirus-lab-tests\nhttps://confluence.ihtsdotools.org/display/RMT/SNOMED+CT+March+2020+International+Edition+-+SNOMED+International+Release+notes\n\nGiven the variability in laboratory coding of tests, this value set will be most useful with robust mapping of source data to the LOINC and HCPCS reference terms.  Source data may commonly contain codes from LabCorp (https://www.labcorp.com/coronavirusdiseasecovid19/providerinformation), Quest (https://www.questdiagnostics.com/home/Covid19/), and Bioreference (https://www.bioreference.com/coronavirus/).",
  "compose" : {
    "exclude" : [ ],
    "include" : [ {
      "valueSet" : [ "http://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113762.1.4.1223.1" ]
    }, {
      "valueSet" : [ "http://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113762.1.4.1223.13" ]
    }, {
      "valueSet" : [ "http://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113762.1.4.1223.15" ]
    } ]
  },
  "date" : "2022-03-03T18:46:01-05:00",
  "meta" : {
    "versionId" : "14",
    "lastUpdated" : "2023-12-21T17:43:03.000-05:00",
    "profile" : [ "http://hl7.org/fhir/StructureDefinition/shareablevalueset", "http://hl7.org/fhir/us/cqfmeasures/StructureDefinition/computable-valueset-cqfm", "http://hl7.org/fhir/us/cqfmeasures/StructureDefinition/publishable-valueset-cqfm" ]
  },
  "publisher" : "CareEvolution Steward",
  "jurisdiction" : [ {
    "coding" : [ {
      "system" : "urn:iso:std:iso:3166",
      "code" : "US"
    } ]
  } ],
  "purpose" : "(Clinical Focus: Intended to support surveillance and monitoring of testing rates and testing results),(Data Element Scope: Compilation of LOINC, HCPCS, and SNOMED codes for lab tests of COVID19 virus and antibodies),(Inclusion Criteria: LOINC, HCPCS, and SNOMED codes for COVID19 related lab tests, including prerelease and emergency codes (once available in VSAC), reference laboratory, point of care, and homebased tests),(Exclusion Criteria: None)",
  "name" : "COVID19LabTests",
  "experimental" : false,
  "resourceType" : "ValueSet",
  "expansion" : {
    "contains" : [ {
      "system" : "http://snomed.info/sct",
      "code" : "840533007",
      "display" : "Severe acute respiratory syndrome coronavirus 2 (organism)",
      "version" : "http://snomed.info/sct/731000124108/version/20230901"
    }, {
      "system" : "http://snomed.info/sct",
      "code" : "840535000",
      "display" : "Antibody to severe acute respiratory syndrome coronavirus 2 (substance)",
      "version" : "http://snomed.info/sct/731000124108/version/20230901"
    }, {
      "system" : "http://snomed.info/sct",
      "code" : "840536004",
      "display" : "Antigen of severe acute respiratory syndrome coronavirus 2 (substance)",
      "version" : "http://snomed.info/sct/731000124108/version/20230901"
    }, {
      "system" : "http://loinc.org",
      "code" : "94306-8",
      "display" : "SARS-CoV-2 (COVID-19) RNA panel - Specimen by NAA with probe detection",
      "version" : "2.76"
    }, {
      "system" : "http://loinc.org",
      "code" : "94307-6",
      "display" : "SARS-CoV-2 (COVID-19) N gene [Presence] in Specimen by Nucleic acid amplification using CDC primer-probe set N1",
      "version" : "2.76"
    }, {
      "system" : "http://loinc.org",
      "code" : "94308-4",
      "display" : "SARS-CoV-2 (COVID-19) N gene [Presence] in Specimen by Nucleic acid amplification using CDC primer-probe set N2",
      "version" : "2.76"
    }, {
      "system" : "http://loinc.org",
      "code" : "94309-2",
      "display" : "SARS-CoV-2 (COVID-19) RNA [Presence] in Specimen by NAA with probe detection",
      "version" : "2.76"
    }, {
      "system" : "http://loinc.org",
      "code" : "94310-0",
      "display" : "SARS-related coronavirus N gene [Presence] in Specimen by Nucleic acid amplification using CDC primer-probe set N3",
      "version" : "2.76"
    }, {
      "system" : "http://loinc.org",
      "code" : "94311-8",
      "display" : "SARS-CoV-2 (COVID-19) N gene [Cycle Threshold #] in Specimen by Nucleic acid amplification using CDC primer-probe set N1",
      "version" : "2.76"
    }, {
      "system" : "http://loinc.org",
      "code" : "94312-6",
      "display" : "SARS-CoV-2 (COVID-19) N gene [Cycle Threshold #] in Specimen by Nucleic acid amplification using CDC primer-probe set N2",
      "version" : "2.76"
    }, {
      "system" : "http://loinc.org",
      "code" : "94313-4",
      "display" : "SARS-related coronavirus N gene [Cycle Threshold #] in Specimen by Nucleic acid amplification using CDC primer-probe set N3",
      "version" : "2.76"
    }, {
      "system" : "http://loinc.org",
      "code" : "94314-2",
      "display" : "SARS-CoV-2 (COVID-19) RdRp gene [Presence] in Specimen by NAA with probe detection",
      "version" : "2.76"
    }, {
      "system" : "http://loinc.org",
      "code" : "94315-9",
      "display" : "SARS-related coronavirus E gene [Presence] in Specimen by NAA with probe detection",
      "version" : "2.76"
    }, {
      "system" : "http://loinc.org",
      "code" : "94316-7",
      "display" : "SARS-CoV-2 (COVID-19) N gene [Presence] in Specimen by NAA with probe detection",
      "version" : "2.76"
    }, {
      "system" : "http://loinc.org",
      "code" : "94500-6",
      "display" : "SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory system specimen by NAA with probe detection",
      "version" : "2.76"
    }, {
      "system" : "http://loinc.org",
      "code" : "94502-2",
      "display" : "SARS-related coronavirus RNA [Presence] in Respiratory system specimen by NAA with probe detection",
      "version" : "2.76"
    }, {
      "system" : "http://loinc.org",
      "code" : "94503-0",
      "display" : "SARS-CoV-2 (COVID-19) Ab panel - Serum, Plasma or Blood by Rapid immunoassay",
      "version" : "2.76"
    }, {
      "system" : "http://loinc.org",
      "code" : "94504-8",
      "display" : "SARS-CoV-2 (COVID-19) Ab panel - Serum or Plasma by Immunoassay",
      "version" : "2.76"
    }, {
      "system" : "http://loinc.org",
      "code" : "94505-5",
      "display" : "SARS-CoV-2 (COVID-19) IgG Ab [Units/volume] in Serum or Plasma by Immunoassay",
      "version" : "2.76"
    }, {
      "system" : "http://loinc.org",
      "code" : "94506-3",
      "display" : "SARS-CoV-2 (COVID-19) IgM Ab [Units/volume] in Serum or Plasma by Immunoassay",
      "version" : "2.76"
    }, {
      "system" : "http://loinc.org",
      "code" : "94507-1",
      "display" : "SARS-CoV-2 (COVID-19) IgG Ab [Presence] in Serum, Plasma or Blood by Rapid immunoassay",
      "version" : "2.76"
    }, {
      "system" : "http://loinc.org",
      "code" : "94508-9",
      "display" : "SARS-CoV-2 (COVID-19) IgM Ab [Presence] in Serum, Plasma or Blood by Rapid immunoassay",
      "version" : "2.76"
    }, {
      "system" : "http://loinc.org",
      "code" : "94509-7",
      "display" : "SARS-related coronavirus E gene [Cycle Threshold #] in Specimen by NAA with probe detection",
      "version" : "2.76"
    }, {
      "system" : "http://loinc.org",
      "code" : "94510-5",
      "display" : "SARS-CoV-2 (COVID-19) N gene [Cycle Threshold #] in Specimen by NAA with probe detection",
      "version" : "2.76"
    }, {
      "system" : "http://loinc.org",
      "code" : "94511-3",
      "display" : "SARS-CoV-2 (COVID-19) ORF1ab region [Cycle Threshold #] in Specimen by NAA with probe detection",
      "version" : "2.76"
    }, {
      "system" : "http://loinc.org",
      "code" : "94531-1",
      "display" : "SARS-CoV-2 (COVID-19) RNA panel - Respiratory system specimen by NAA with probe detection",
      "version" : "2.76"
    }, {
      "system" : "http://loinc.org",
      "code" : "94532-9",
      "display" : "SARS-related coronavirus+MERS coronavirus RNA [Presence] in Respiratory system specimen by NAA with probe detection",
      "version" : "2.76"
    }, {
      "system" : "http://loinc.org",
      "code" : "94533-7",
      "display" : "SARS-CoV-2 (COVID-19) N gene [Presence] in Respiratory system specimen by NAA with probe detection",
      "version" : "2.76"
    }, {
      "system" : "http://loinc.org",
      "code" : "94534-5",
      "display" : "SARS-CoV-2 (COVID-19) RdRp gene [Presence] in Respiratory system specimen by NAA with probe detection",
      "version" : "2.76"
    }, {
      "system" : "http://loinc.org",
      "code" : "94547-7",
      "display" : "SARS-CoV-2 (COVID-19) IgG+IgM Ab [Presence] in Serum or Plasma by Immunoassay",
      "version" : "2.76"
    }, {
      "system" : "http://loinc.org",
      "code" : "94558-4",
      "display" : "SARS-CoV-2 (COVID-19) Ag [Presence] in Respiratory system specimen by Rapid immunoassay",
      "version" : "2.76"
    }, {
      "system" : "http://loinc.org",
      "code" : "94559-2",
      "display" : "SARS-CoV-2 (COVID-19) ORF1ab region [Presence] in Respiratory system specimen by NAA with probe detection",
      "version" : "2.76"
    }, {
      "system" : "http://loinc.org",
      "code" : "94562-6",
      "display" : "SARS-CoV-2 (COVID-19) IgA Ab [Presence] in Serum or Plasma by Immunoassay",
      "version" : "2.76"
    }, {
      "system" : "http://loinc.org",
      "code" : "94563-4",
      "display" : "SARS-CoV-2 (COVID-19) IgG Ab [Presence] in Serum or Plasma by Immunoassay",
      "version" : "2.76"
    }, {
      "system" : "http://loinc.org",
      "code" : "94564-2",
      "display" : "SARS-CoV-2 (COVID-19) IgM Ab [Presence] in Serum or Plasma by Immunoassay",
      "version" : "2.76"
    }, {
      "system" : "http://loinc.org",
      "code" : "94565-9",
      "display" : "SARS-CoV-2 (COVID-19) RNA [Presence] in Nasopharynx by NAA with non-probe detection",
      "version" : "2.76"
    }, {
      "system" : "http://www.nlm.nih.gov/research/umls/hcpcs",
      "code" : "U0001",
      "display" : "Cdc 2019 novel coronavirus (2019-ncov) real-time rt-pcr diagnostic panel",
      "version" : "2024"
    }, {
      "system" : "http://www.nlm.nih.gov/research/umls/hcpcs",
      "code" : "U0002",
      "display" : "2019-ncov coronavirus, sars-cov-2/2019-ncov (covid-19), any technique, multiple types or subtypes (includes all targets), non-cdc",
      "version" : "2024"
    } ],
    "total" : 38,
    "identifier" : "urn:uuid:a27cc17f-4744-49de-bebb-8cd4dd3eef3a",
    "timestamp" : "2024-04-23T12:20:24-04:00"
  },
  "title" : "COVID19 Lab Tests",
  "extension" : [ {
    "valueString" : "CareEvolution Author",
    "url" : "http://hl7.org/fhir/StructureDefinition/valueset-author"
  }, {
    "valueDate" : "2022-12-15",
    "url" : "http://hl7.org/fhir/StructureDefinition/resource-lastReviewDate"
  }, {
    "valueDate" : "2020-04-07",
    "url" : "http://hl7.org/fhir/StructureDefinition/valueset-effectiveDate"
  }, {
    "url" : "http://health-samurai.io/extensions/source",
    "valueCode" : "db"
  } ],
  "status" : "active",
  "id" : "7ca70933-3ef6-4742-a198-a987e756780f",
  "url" : "http://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113762.1.4.1223.14",
  "identifier" : [ {
    "system" : "urn:ietf:rfc:3986",
    "value" : "urn:oid:2.16.840.1.113762.1.4.1223.14"
  } ],
  "version" : "20200407"
}