LIVD SARS CoV2 Test Codes

{
  "description" : "Using LOINC and SNOMED-CT to identify and report SARS-CoV-2 test results in electronic reporting systems will facilitate timely and quality data reporting to state and federal public health agencies.  These codes are maintained by the CDC at https://www.cdc.gov/csels/dls/sars-cov-2-livd-codes.html",
  "compose" : {
    "exclude" : [ ],
    "include" : [ {
      "system" : "http://loinc.org",
      "extension" : [ {
        "extension" : [ {
          "valueString" : "concept",
          "url" : "path"
        }, {
          "url" : "count",
          "valueInteger" : 44
        } ],
        "url" : "http://health-samurai.io/extensions/excised-data"
      } ]
    } ]
  },
  "date" : "2020-10-03T01:00:25-04:00",
  "meta" : {
    "versionId" : "22",
    "lastUpdated" : "2020-10-03T01:00:25.000-04:00",
    "profile" : [ "http://hl7.org/fhir/StructureDefinition/shareablevalueset", "http://hl7.org/fhir/us/cqfmeasures/StructureDefinition/publishable-valueset-cqfm" ]
  },
  "publisher" : "ONC",
  "jurisdiction" : [ {
    "extension" : [ {
      "valueString" : "UNKNOWN",
      "url" : "http://hl7.org/fhir/StructureDefinition/data-absent-reason"
    } ]
  } ],
  "purpose" : "(Clinical Focus: EHR and other health IT to update systems to accommodate US SARS CoV-2 specimen collection, testing and results reporting.),(Data Element Scope: SARS CoV-2 test codes approved by CDC as part of the LIVD system (https://www.cdc.gov/csels/dls/sars-cov-2-livd-codes.html)),(Inclusion Criteria: LOINC codes for US approved SARS CoV-2 in vitro diagnostic tests),(Exclusion Criteria: Codes not approved for use in US or for tests not yet approved in US)",
  "name" : "LIVDSARSCoV2TestCodes",
  "experimental" : false,
  "resourceType" : "ValueSet",
  "expansion" : {
    "contains" : [ {
      "system" : "http://loinc.org",
      "code" : "50548-7",
      "display" : "Respiratory virus DNA+RNA [Identifier] in Specimen by NAA with probe detection",
      "version" : "2.74"
    }, {
      "system" : "http://loinc.org",
      "code" : "68993-5",
      "display" : "Human RNase P RNA [Presence] in Specimen by NAA with probe detection",
      "version" : "2.74"
    }, {
      "system" : "http://loinc.org",
      "code" : "82159-5",
      "display" : "Respiratory pathogens DNA and RNA panel - Nasopharynx by NAA with non-probe detection",
      "version" : "2.74"
    }, {
      "system" : "http://loinc.org",
      "code" : "94306-8",
      "display" : "SARS-CoV-2 (COVID-19) RNA panel - Specimen by NAA with probe detection",
      "version" : "2.74"
    }, {
      "system" : "http://loinc.org",
      "code" : "94307-6",
      "display" : "SARS-CoV-2 (COVID-19) N gene [Presence] in Specimen by Nucleic acid amplification using CDC primer-probe set N1",
      "version" : "2.74"
    }, {
      "system" : "http://loinc.org",
      "code" : "94308-4",
      "display" : "SARS-CoV-2 (COVID-19) N gene [Presence] in Specimen by Nucleic acid amplification using CDC primer-probe set N2",
      "version" : "2.74"
    }, {
      "system" : "http://loinc.org",
      "code" : "94309-2",
      "display" : "SARS-CoV-2 (COVID-19) RNA [Presence] in Specimen by NAA with probe detection",
      "version" : "2.74"
    }, {
      "system" : "http://loinc.org",
      "code" : "94500-6",
      "display" : "SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory specimen by NAA with probe detection",
      "version" : "2.74"
    }, {
      "system" : "http://loinc.org",
      "code" : "94502-2",
      "display" : "SARS-related coronavirus RNA [Presence] in Respiratory specimen by NAA with probe detection",
      "version" : "2.74"
    }, {
      "system" : "http://loinc.org",
      "code" : "94503-0",
      "display" : "SARS-CoV-2 (COVID-19) Ab panel - Serum, Plasma or Blood by Rapid immunoassay",
      "version" : "2.74"
    }, {
      "system" : "http://loinc.org",
      "code" : "94504-8",
      "display" : "SARS-CoV-2 (COVID-19) Ab panel - Serum or Plasma by Immunoassay",
      "version" : "2.74"
    }, {
      "system" : "http://loinc.org",
      "code" : "94507-1",
      "display" : "SARS-CoV-2 (COVID-19) IgG Ab [Presence] in Serum, Plasma or Blood by Rapid immunoassay",
      "version" : "2.74"
    }, {
      "system" : "http://loinc.org",
      "code" : "94508-9",
      "display" : "SARS-CoV-2 (COVID-19) IgM Ab [Presence] in Serum, Plasma or Blood by Rapid immunoassay",
      "version" : "2.74"
    }, {
      "system" : "http://loinc.org",
      "code" : "94531-1",
      "display" : "SARS-CoV-2 (COVID-19) RNA panel - Respiratory specimen by NAA with probe detection",
      "version" : "2.74"
    }, {
      "system" : "http://loinc.org",
      "code" : "94533-7",
      "display" : "SARS-CoV-2 (COVID-19) N gene [Presence] in Respiratory specimen by NAA with probe detection",
      "version" : "2.74"
    }, {
      "system" : "http://loinc.org",
      "code" : "94534-5",
      "display" : "SARS-CoV-2 (COVID-19) RdRp gene [Presence] in Respiratory specimen by NAA with probe detection",
      "version" : "2.74"
    }, {
      "system" : "http://loinc.org",
      "code" : "94547-7",
      "display" : "SARS-CoV-2 (COVID-19) IgG+IgM Ab [Presence] in Serum or Plasma by Immunoassay",
      "version" : "2.74"
    }, {
      "system" : "http://loinc.org",
      "code" : "94558-4",
      "display" : "SARS-CoV-2 (COVID-19) Ag [Presence] in Respiratory specimen by Rapid immunoassay",
      "version" : "2.74"
    }, {
      "system" : "http://loinc.org",
      "code" : "94559-2",
      "display" : "SARS-CoV-2 (COVID-19) ORF1ab region [Presence] in Respiratory specimen by NAA with probe detection",
      "version" : "2.74"
    }, {
      "system" : "http://loinc.org",
      "code" : "94562-6",
      "display" : "SARS-CoV-2 (COVID-19) IgA Ab [Presence] in Serum or Plasma by Immunoassay",
      "version" : "2.74"
    }, {
      "system" : "http://loinc.org",
      "code" : "94563-4",
      "display" : "SARS-CoV-2 (COVID-19) IgG Ab [Presence] in Serum or Plasma by Immunoassay",
      "version" : "2.74"
    }, {
      "system" : "http://loinc.org",
      "code" : "94564-2",
      "display" : "SARS-CoV-2 (COVID-19) IgM Ab [Presence] in Serum or Plasma by Immunoassay",
      "version" : "2.74"
    }, {
      "system" : "http://loinc.org",
      "code" : "94565-9",
      "display" : "SARS-CoV-2 (COVID-19) RNA [Presence] in Nasopharynx by NAA with non-probe detection",
      "version" : "2.74"
    }, {
      "system" : "http://loinc.org",
      "code" : "94640-0",
      "display" : "SARS-CoV-2 (COVID-19) S gene [Presence] in Respiratory specimen by NAA with probe detection",
      "version" : "2.74"
    }, {
      "system" : "http://loinc.org",
      "code" : "94661-6",
      "display" : "SARS-CoV-2 (COVID-19) Ab [Interpretation] in Serum or Plasma",
      "version" : "2.74"
    }, {
      "system" : "http://loinc.org",
      "code" : "94756-4",
      "display" : "SARS-CoV-2 (COVID-19) N gene [Presence] in Respiratory specimen by Nucleic acid amplification using CDC primer-probe set N1",
      "version" : "2.74"
    }, {
      "system" : "http://loinc.org",
      "code" : "94757-2",
      "display" : "SARS-CoV-2 (COVID-19) N gene [Presence] in Respiratory specimen by Nucleic acid amplification using CDC primer-probe set N2",
      "version" : "2.74"
    }, {
      "system" : "http://loinc.org",
      "code" : "94758-0",
      "display" : "SARS-related coronavirus E gene [Presence] in Respiratory specimen by NAA with probe detection",
      "version" : "2.74"
    }, {
      "system" : "http://loinc.org",
      "code" : "94759-8",
      "display" : "SARS-CoV-2 (COVID-19) RNA [Presence] in Nasopharynx by NAA with probe detection",
      "version" : "2.74"
    }, {
      "system" : "http://loinc.org",
      "code" : "94760-6",
      "display" : "SARS-CoV-2 (COVID-19) N gene [Presence] in Nasopharynx by NAA with probe detection",
      "version" : "2.74"
    }, {
      "system" : "http://loinc.org",
      "code" : "94761-4",
      "display" : "SARS-CoV-2 (COVID-19) IgG Ab [Presence] in DBS by Immunoassay",
      "version" : "2.74"
    }, {
      "system" : "http://loinc.org",
      "code" : "94762-2",
      "display" : "SARS-CoV-2 (COVID-19) Ab [Presence] in Serum or Plasma by Immunoassay",
      "version" : "2.74"
    }, {
      "system" : "http://loinc.org",
      "code" : "94764-8",
      "display" : "SARS-CoV-2 (COVID-19) whole genome [Nucleotide sequence] in Isolate or Specimen by Sequencing",
      "version" : "2.74"
    }, {
      "system" : "http://loinc.org",
      "code" : "94845-5",
      "display" : "SARS-CoV-2 (COVID-19) RNA [Presence] in Saliva (oral fluid) by NAA with probe detection",
      "version" : "2.74"
    }, {
      "system" : "http://loinc.org",
      "code" : "95209-3",
      "display" : "SARS-CoV+SARS-CoV-2 (COVID-19) Ag [Presence] in Respiratory specimen by Rapid immunoassay",
      "version" : "2.74"
    }, {
      "system" : "http://loinc.org",
      "code" : "95406-5",
      "display" : "SARS-CoV-2 (COVID-19) RNA [Presence] in Nose by NAA with probe detection",
      "version" : "2.74"
    }, {
      "system" : "http://loinc.org",
      "code" : "95409-9",
      "display" : "SARS-CoV-2 (COVID-19) N gene [Presence] in Nose by NAA with probe detection",
      "version" : "2.74"
    }, {
      "system" : "http://loinc.org",
      "code" : "95416-4",
      "display" : "SARS-CoV-2 (COVID-19) IgM Ab [Presence] in DBS by Immunoassay",
      "version" : "2.74"
    }, {
      "system" : "http://loinc.org",
      "code" : "95423-0",
      "display" : "Influenza virus A and B and SARS-CoV-2 (COVID-19) identified in Respiratory specimen by NAA with probe detection",
      "version" : "2.74"
    }, {
      "system" : "http://loinc.org",
      "code" : "95424-8",
      "display" : "SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory specimen by Sequencing",
      "version" : "2.74"
    }, {
      "system" : "http://loinc.org",
      "code" : "95425-5",
      "display" : "SARS-CoV-2 (COVID-19) N gene [Presence] in Saliva (oral fluid) by NAA with probe detection",
      "version" : "2.74"
    }, {
      "system" : "http://loinc.org",
      "code" : "95542-7",
      "display" : "SARS-CoV-2 (COVID-19) Ab [Presence] in Serum, Plasma or Blood by Rapid immunoassay",
      "version" : "2.74"
    }, {
      "system" : "http://loinc.org",
      "code" : "95608-6",
      "display" : "SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory specimen by NAA with non-probe detection",
      "version" : "2.74"
    }, {
      "system" : "http://loinc.org",
      "code" : "95609-4",
      "display" : "SARS-CoV-2 (COVID-19) S gene [Presence] in Respiratory specimen by Sequencing",
      "version" : "2.74"
    } ],
    "offset" : 0,
    "total" : 44,
    "identifier" : "urn:uuid:1f259699-7d80-4dab-b7f8-c6f1fd02509f",
    "timestamp" : "2023-06-29T18:18:01-04:00",
    "parameter" : [ {
      "name" : "count",
      "valueInteger" : 1000
    }, {
      "name" : "offset",
      "valueInteger" : 0
    } ]
  },
  "title" : "LIVD SARS CoV2 Test Codes",
  "extension" : [ {
    "valueString" : "ONC Author",
    "url" : "http://hl7.org/fhir/StructureDefinition/valueset-author"
  }, {
    "valueDate" : "2022-12-15",
    "url" : "http://hl7.org/fhir/StructureDefinition/resource-lastReviewDate"
  }, {
    "valueDate" : "2020-10-03",
    "url" : "http://hl7.org/fhir/StructureDefinition/valueset-effectiveDate"
  }, {
    "url" : "http://health-samurai.io/extensions/source",
    "valueCode" : "db"
  } ],
  "status" : "active",
  "id" : "52b3fab4-267c-417c-ab31-bf7556271817",
  "url" : "http://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113762.1.4.1114.9",
  "identifier" : [ {
    "system" : "urn:ietf:rfc:3986",
    "value" : "urn:oid:2.16.840.1.113762.1.4.1114.9"
  } ],
  "version" : "20201003"
}