COVID_19 (Tests for SARS_CoV_2 Genomic Sequence)

{
  "description" : "This value set contains some provisional codes created for the COVID-19 response. It may be incomplete, as not all provisional COVID-19 codes are available in VSAC at the time of publication. Please contact the CSTE RCKMS Content Team for a complete list of codes to be included in this value set.",
  "compose" : {
    "exclude" : [ ],
    "include" : [ {
      "system" : "http://loinc.org",
      "extension" : [ {
        "extension" : [ {
          "valueString" : "concept",
          "url" : "path"
        }, {
          "url" : "count",
          "valueInteger" : 10
        } ],
        "url" : "http://health-samurai.io/extensions/excised-data"
      } ]
    } ]
  },
  "date" : "2024-01-23T01:10:32-05:00",
  "meta" : {
    "versionId" : "16",
    "lastUpdated" : "2024-01-23T01:10:32.000-05:00",
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  },
  "publisher" : "CSTE Steward",
  "jurisdiction" : [ {
    "coding" : [ {
      "system" : "urn:iso:std:iso:3166",
      "code" : "US"
    } ]
  } ],
  "purpose" : "(Clinical Focus: This set of values contains codes for lab test names that may be ordered or ‘observed’ for detection of SARS-CoV-2 genomic sequence or gene mutation by Molecular genetics method.),(Data Element Scope: Laboratory tests names that were ordered or observed.),(Inclusion Criteria: SARS-like Coronavirus; Coronavirus 2),(Exclusion Criteria: none)",
  "name" : "COVID_19TestsForSARS_CoV_2GenomicSequence",
  "resourceType" : "ValueSet",
  "expansion" : {
    "contains" : [ {
      "system" : "http://loinc.org",
      "code" : "100156-9",
      "display" : "SARS-CoV-2 (COVID-19) variant [Type] in Specimen by NAA with probe detection",
      "version" : "2.77"
    }, {
      "system" : "http://loinc.org",
      "code" : "100157-7",
      "display" : "SARS-CoV-2 (COVID-19) lineage [Type] in Specimen by Sequencing",
      "version" : "2.77"
    }, {
      "system" : "http://loinc.org",
      "code" : "94764-8",
      "display" : "SARS-CoV-2 (COVID-19) whole genome [Nucleotide sequence] in Isolate or Specimen by Sequencing",
      "version" : "2.77"
    }, {
      "system" : "http://loinc.org",
      "code" : "96741-4",
      "display" : "SARS-CoV-2 (COVID-19) variant [Type] in Specimen by Sequencing",
      "version" : "2.77"
    }, {
      "system" : "http://loinc.org",
      "code" : "96751-3",
      "display" : "SARS-CoV-2 (COVID-19) S gene mutation detected [Identifier] in Specimen by Molecular genetics method",
      "version" : "2.77"
    }, {
      "system" : "http://loinc.org",
      "code" : "96752-1",
      "display" : "SARS-CoV-2 (COVID-19) S gene mutation [Presence] in Specimen by Molecular genetics method",
      "version" : "2.77"
    }, {
      "system" : "http://loinc.org",
      "code" : "96755-4",
      "display" : "SARS-CoV-2 (COVID-19) variant interpretation in Specimen Narrative",
      "version" : "2.77"
    }, {
      "system" : "http://loinc.org",
      "code" : "96895-8",
      "display" : "SARS-CoV-2 (COVID-19) lineage [Identifier] in Specimen by Molecular genetics method",
      "version" : "2.77"
    }, {
      "system" : "http://loinc.org",
      "code" : "96896-6",
      "display" : "SARS-CoV-2 (COVID-19) clade [Type] in Specimen by Molecular genetics method",
      "version" : "2.77"
    }, {
      "system" : "http://loinc.org",
      "code" : "99314-7",
      "display" : "SARS-CoV-2 (COVID-19) RdRp gene mutation detected [Identifier] in Specimen by Molecular genetics method",
      "version" : "2.77"
    } ],
    "total" : 10,
    "identifier" : "urn:uuid:8e7a95a8-188b-4fb0-867a-89ba6a42b282",
    "timestamp" : "2024-06-14T11:50:55-04:00"
  },
  "title" : "COVID_19 (Tests for SARS_CoV_2 Genomic Sequence)",
  "extension" : [ {
    "valueString" : "CSTE Author",
    "url" : "http://hl7.org/fhir/StructureDefinition/valueset-author"
  }, {
    "valueString" : "2019nCoV,Trigger",
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    "valueDate" : "2024-01-23",
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    "valueDate" : "2024-01-23",
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    "valueCode" : "db"
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  "status" : "active",
  "id" : "2.16.840.1.113762.1.4.1146.1409",
  "url" : "http://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113762.1.4.1146.1409",
  "identifier" : [ {
    "system" : "urn:ietf:rfc:3986",
    "value" : "urn:oid:2.16.840.1.113762.1.4.1146.1409"
  } ],
  "version" : "20240123"
}