COVID_19 (Organism or Substance in Lab Results)

{
  "description" : "This value set contains some provisional codes created for the COVID-19 response. It may be incomplete, as not all provisional COVID-19 codes are available in VSAC at the time of publication. Please contact the CSTE RCKMS Content Team for a complete list of codes to be included in this value set.",
  "compose" : {
    "exclude" : [ ],
    "include" : [ {
      "system" : "http://snomed.info/sct",
      "extension" : [ {
        "extension" : [ {
          "valueString" : "concept",
          "url" : "path"
        }, {
          "url" : "count",
          "valueInteger" : 16
        } ],
        "url" : "http://health-samurai.io/extensions/excised-data"
      } ]
    } ]
  },
  "date" : "2024-01-23T01:10:32-05:00",
  "meta" : {
    "versionId" : "30",
    "lastUpdated" : "2024-01-23T01:10:32.000-05:00",
    "profile" : [ "http://hl7.org/fhir/StructureDefinition/shareablevalueset", "http://hl7.org/fhir/us/cqfmeasures/StructureDefinition/computable-valueset-cqfm", "http://hl7.org/fhir/us/cqfmeasures/StructureDefinition/publishable-valueset-cqfm" ]
  },
  "publisher" : "CSTE Steward",
  "jurisdiction" : [ {
    "coding" : [ {
      "system" : "urn:iso:std:iso:3166",
      "code" : "US"
    } ]
  } ],
  "purpose" : "(Clinical Focus: This set of values contains organisms and or substances relevant for reporting SARS_CoV_2.),(Data Element Scope: Organism and or substance names reported in laboratory results),(Inclusion Criteria: coronavirus 2 organism, antigen),(Exclusion Criteria: antibody)",
  "name" : "COVID_19OrganismOrSubstanceInLabResults",
  "resourceType" : "ValueSet",
  "expansion" : {
    "contains" : [ {
      "system" : "http://snomed.info/sct",
      "code" : "1157045004",
      "display" : "Antigen of severe acute respiratory syndrome coronavirus 2 protein (substance)",
      "version" : "http://snomed.info/sct/731000124108/version/20240301"
    }, {
      "system" : "http://snomed.info/sct",
      "code" : "1179416004",
      "display" : "Deoxyribonucleic acid of severe acute respiratory syndrome coronavirus 2 (substance)",
      "version" : "http://snomed.info/sct/731000124108/version/20240301"
    }, {
      "system" : "http://snomed.info/sct",
      "code" : "1187591006",
      "display" : "Deoxyribonucleic acid plasmid encoding severe acute respiratory syndrome coronavirus 2 spike protein (substance)",
      "version" : "http://snomed.info/sct/731000124108/version/20240301"
    }, {
      "system" : "http://snomed.info/sct",
      "code" : "1240411000000107",
      "display" : "Ribonucleic acid of severe acute respiratory syndrome coronavirus 2 (substance)",
      "version" : "http://snomed.info/sct/731000124108/version/20240301"
    }, {
      "system" : "http://snomed.info/sct",
      "code" : "1240581000000104",
      "display" : "Severe acute respiratory syndrome coronavirus 2 detected (finding)",
      "version" : "http://snomed.info/sct/731000124108/version/20240301"
    }, {
      "system" : "http://snomed.info/sct",
      "code" : "29301000087104",
      "display" : "Antigen of severe acute respiratory syndrome coronavirus 2 recombinant spike protein (substance)",
      "version" : "http://snomed.info/sct/731000124108/version/20240301"
    }, {
      "system" : "http://snomed.info/sct",
      "code" : "840533007",
      "display" : "Severe acute respiratory syndrome coronavirus 2 (organism)",
      "version" : "http://snomed.info/sct/731000124108/version/20240301"
    }, {
      "system" : "http://snomed.info/sct",
      "code" : "840536004",
      "display" : "Antigen of severe acute respiratory syndrome coronavirus 2 (substance)",
      "version" : "http://snomed.info/sct/731000124108/version/20240301"
    }, {
      "system" : "http://snomed.info/sct",
      "code" : "871553007",
      "display" : "Detection of severe acute respiratory syndrome coronavirus 2 antigen (observable entity)",
      "version" : "http://snomed.info/sct/731000124108/version/20240301"
    }, {
      "system" : "http://snomed.info/sct",
      "code" : "871555000",
      "display" : "Detection of ribonucleic acid of severe acute respiratory syndrome coronavirus 2 (observable entity)",
      "version" : "http://snomed.info/sct/731000124108/version/20240301"
    }, {
      "system" : "http://snomed.info/sct",
      "code" : "871556004",
      "display" : "Detection of ribonucleic acid of severe acute respiratory syndrome coronavirus 2 in nasopharyngeal swab (observable entity)",
      "version" : "http://snomed.info/sct/731000124108/version/20240301"
    }, {
      "system" : "http://snomed.info/sct",
      "code" : "871557008",
      "display" : "Detection of ribonucleic acid of severe acute respiratory syndrome coronavirus 2 in oropharyngeal swab (observable entity)",
      "version" : "http://snomed.info/sct/731000124108/version/20240301"
    }, {
      "system" : "http://snomed.info/sct",
      "code" : "871558003",
      "display" : "Detection of ribonucleic acid of severe acute respiratory syndrome coronavirus 2 in sputum (observable entity)",
      "version" : "http://snomed.info/sct/731000124108/version/20240301"
    }, {
      "system" : "http://snomed.info/sct",
      "code" : "871559006",
      "display" : "Detection of ribonucleic acid of severe acute respiratory syndrome coronavirus 2 in bronchoalveolar lavage fluid (observable entity)",
      "version" : "http://snomed.info/sct/731000124108/version/20240301"
    }, {
      "system" : "http://snomed.info/sct",
      "code" : "871560001",
      "display" : "Detection of ribonucleic acid of severe acute respiratory syndrome coronavirus 2 using polymerase chain reaction (observable entity)",
      "version" : "http://snomed.info/sct/731000124108/version/20240301"
    }, {
      "system" : "http://snomed.info/sct",
      "code" : "871562009",
      "display" : "Detection of severe acute respiratory syndrome coronavirus 2 (observable entity)",
      "version" : "http://snomed.info/sct/731000124108/version/20240301"
    } ],
    "total" : 16,
    "identifier" : "urn:uuid:935579ac-7404-483d-96f6-f9db3cedf32d",
    "timestamp" : "2024-06-14T11:43:43-04:00"
  },
  "title" : "COVID_19 (Organism or Substance in Lab Results)",
  "extension" : [ {
    "valueString" : "CSTE Author",
    "url" : "http://hl7.org/fhir/StructureDefinition/valueset-author"
  }, {
    "valueString" : "2019nCoV,Trigger",
    "url" : "http://hl7.org/fhir/StructureDefinition/valueset-keyWord"
  }, {
    "valueDate" : "2024-01-23",
    "url" : "http://hl7.org/fhir/StructureDefinition/resource-lastReviewDate"
  }, {
    "valueDate" : "2024-01-23",
    "url" : "http://hl7.org/fhir/StructureDefinition/valueset-effectiveDate"
  }, {
    "url" : "http://health-samurai.io/extensions/source",
    "valueCode" : "db"
  } ],
  "status" : "active",
  "id" : "2.16.840.1.113762.1.4.1146.1143",
  "url" : "http://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113762.1.4.1146.1143",
  "identifier" : [ {
    "system" : "urn:ietf:rfc:3986",
    "value" : "urn:oid:2.16.840.1.113762.1.4.1146.1143"
  } ],
  "version" : "20240123"
}