Variant Confidence Status Codes

{
  "description" : "A code that represents the confidence of a true positive variant call.",
  "date" : "2024-12-12T21:16:09+00:00",
  "publisher" : "HL7 International / Clinical Genomics",
  "jurisdiction" : [ {
    "coding" : [ {
      "system" : "http://unstats.un.org/unsd/methods/m49/m49.htm",
      "code" : "001",
      "display" : "World"
    } ]
  } ],
  "content" : "complete",
  "property" : null,
  "name" : "VariantConfidenceStatusCS",
  "experimental" : true,
  "resourceType" : "CodeSystem",
  "title" : "Variant Confidence Status Codes",
  "extension" : [ {
    "valueCode" : "cg",
    "url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg"
  }, {
    "extension" : [ {
      "valueString" : "concept",
      "url" : "path"
    }, {
      "url" : "count",
      "valueInteger" : 3
    } ],
    "url" : "http://health-samurai.io/extensions/excised-data"
  }, {
    "url" : "http://health-samurai.io/extensions/source",
    "valueCode" : "db"
  } ],
  "status" : "active",
  "id" : "variant-confidence-status-cs",
  "count" : 3,
  "url" : "http://terminology.hl7.org/CodeSystem/variant-confidence-status-cs",
  "caseSensitive" : true,
  "version" : "3.0.0",
  "contact" : [ {
    "name" : "HL7 International / Clinical Genomics",
    "telecom" : [ {
      "system" : "url",
      "value" : "http://www.hl7.org/Special/committees/clingenomics"
    }, {
      "system" : "email",
      "value" : "cg@lists.HL7.org"
    } ]
  } ],
  "text" : {
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: CodeSystem variant-confidence-status-cs</b></p><a name=\"variant-confidence-status-cs\"> </a><a name=\"hcvariant-confidence-status-cs\"> </a><a name=\"variant-confidence-status-cs-en-US\"> </a><p>This case-sensitive code system <code>http://terminology.hl7.org/CodeSystem/variant-confidence-status-cs</code> defines the following codes:</p><table class=\"codes\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td><td><b>Definition</b></td></tr><tr><td style=\"white-space:nowrap\">high<a name=\"variant-confidence-status-cs-high\"> </a></td><td>High</td><td>High confidence true positive variant call. Suitable for clinical reporting.</td></tr><tr><td style=\"white-space:nowrap\">intermediate<a name=\"variant-confidence-status-cs-intermediate\"> </a></td><td>Intermediate</td><td>Candidate true positive variant call. Unable to confirm without additional testing.</td></tr><tr><td style=\"white-space:nowrap\">low<a name=\"variant-confidence-status-cs-low\"> </a></td><td>Low</td><td>High confidence false positive variant call.</td></tr></table></div>",
    "status" : "generated"
  }
}